Myocarditis
1
Overview
2
RNAseq analysis (quality control and differential analysis)
3
List of differentially expressed genes
4
R packages required
5
Gene groupings
5.1
R function Upset
5.2
Group visualisation
5.3
Grouped genes
5.4
Heatmap visualisation
6
Pathway analysis
6.1
Enrichment analysis
6.2
Enriched pathways
7
Subnetwork analysis
7.1
Subnetwork identification
7.2
Subnetwork visualisation
7.3
Gene nodes in the subnetwork
7.4
Edges in the subnetwork
8
Combinatorial attack analysis
8.1
R function CombAttack
8.2
Individual nodes
8.3
Two-node combination
9
R session information
10
Flow cytometry data
Identification of and combinatorial attack on a gene subnetwork active during experimental autoimmune myocarditis
7.4
Edges in the subnetwork
Available at
subnetwork_edge_info.txt
or below.