| dnet |
1.1.7 |
Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology |
| dplyr |
1.0.1 |
A Grammar of Data Manipulation |
| forcats |
0.5.0 |
Tools for Working with Categorical Variables (Factors) |
| ggplot2 |
3.3.2 |
Create Elegant Data Visualisations Using the Grammar of Graphics |
| ggupset |
0.3.0 |
Combination Matrix Axis for 'ggplot2' to Create 'UpSet' Plots |
| hexbin |
1.28.1 |
Hexagonal Binning Routines |
| igraph |
1.2.5 |
Network Analysis and Visualization |
| png |
0.1-7 |
Read and write PNG images |
| purrr |
0.3.4 |
Functional Programming Tools |
| readr |
1.3.1 |
Read Rectangular Text Data |
| stringr |
1.4.0 |
Simple, Consistent Wrappers for Common String Operations |
| supraHex |
1.27.3 |
supraHex: a supra-hexagonal map for analysing tabular omics data |
| tibble |
3.0.3 |
Simple Data Frames |
| tidyr |
1.1.1 |
Tidy Messy Data |
| tidyverse |
1.3.0 |
Easily Install and Load the 'Tidyverse' |
| XGR |
1.1.8 |
Exploring Genomic Relations for Enhanced Interpretation Through Enrichment, Similarity, Network and Annotation Analysis |
| ape |
5.4 |
Analyses of Phylogenetics and Evolution |
| assertthat |
0.2.1 |
Easy Pre and Post Assertions |
| backports |
1.1.8 |
Reimplementations of Functions Introduced Since R-3.0.0 |
| BiocGenerics |
0.34.0 |
S4 generic functions used in Bioconductor |
| bitops |
1.0-6 |
Bitwise Operations |
| blob |
1.2.1 |
A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') |
| bookdown |
0.20 |
Authoring Books and Technical Documents with R Markdown |
| broom |
0.7.0 |
Convert Statistical Objects into Tidy Tibbles |
| cellranger |
1.1.0 |
Translate Spreadsheet Cell Ranges to Rows and Columns |
| cli |
2.0.2 |
Helpers for Developing Command Line Interfaces |
| colorspace |
1.4-1 |
A Toolbox for Manipulating and Assessing Colors and Palettes |
| compiler |
4.0.2 |
The R Compiler Package |
| crayon |
1.3.4 |
Colored Terminal Output |
| crosstalk |
1.1.0.1 |
Inter-Widget Interactivity for HTML Widgets |
| crul |
1.0.0 |
HTTP Client |
| curl |
4.3 |
A Modern and Flexible Web Client for R |
| DBI |
1.1.0 |
R Database Interface |
| dbplyr |
1.4.4 |
A 'dplyr' Back End for Databases |
| digest |
0.6.25 |
Create Compact Hash Digests of R Objects |
| DT |
0.14 |
A Wrapper of the JavaScript Library 'DataTables' |
| ellipsis |
0.3.1 |
Tools for Working with ... |
| evaluate |
0.14 |
Parsing and Evaluation Tools that Provide More Details than the Default |
| fansi |
0.4.1 |
ANSI Control Sequence Aware String Functions |
| farver |
2.0.3 |
High Performance Colour Space Manipulation |
| fs |
1.5.0 |
Cross-Platform File System Operations Based on 'libuv' |
| generics |
0.0.2 |
Common S3 Generics not Provided by Base R Methods Related to Model Fitting |
| GenomeInfoDb |
1.24.2 |
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style |
| GenomeInfoDbData |
1.2.3 |
Species and taxonomy ID look up tables used by GenomeInfoDb |
| GenomicRanges |
1.40.0 |
Representation and manipulation of genomic intervals |
| ggnetwork |
0.5.8 |
Geometries to Plot Networks with 'ggplot2' |
| ggrepel |
0.8.2 |
Automatically Position Non-Overlapping Text Labels with 'ggplot2' |
| glue |
1.4.1 |
Interpreted String Literals |
| graph |
1.66.0 |
graph: A package to handle graph data structures |
| graphlayouts |
0.7.0 |
Additional Layout Algorithms for Network Visualizations |
| gtable |
0.3.0 |
Arrange 'Grobs' in Tables |
| haven |
2.3.1 |
Import and Export 'SPSS', 'Stata' and 'SAS' Files |
| highr |
0.8 |
Syntax Highlighting for R Source Code |
| hms |
0.5.3 |
Pretty Time of Day |
| htmltools |
0.5.0 |
Tools for HTML |
| htmlwidgets |
1.5.1 |
HTML Widgets for R |
| httpcode |
0.3.0 |
'HTTP' Status Code Helper |
| httr |
1.4.2 |
Tools for Working with URLs and HTTP |
| IRanges |
2.22.2 |
Foundation of integer range manipulation in Bioconductor |
| jsonlite |
1.7.0 |
A Robust, High Performance JSON Parser and Generator for R |
| knitr |
1.29 |
A General-Purpose Package for Dynamic Report Generation in R |
| labeling |
0.3 |
Axis Labeling |
| lattice |
0.20-41 |
Trellis Graphics for R |
| lifecycle |
0.2.0 |
Manage the Life Cycle of your Package Functions |
| lubridate |
1.7.9 |
Make Dealing with Dates a Little Easier |
| magrittr |
1.5 |
A Forward-Pipe Operator for R |
| MASS |
7.3-51.6 |
Support Functions and Datasets for Venables and Ripley's MASS |
| Matrix |
1.2-18 |
Sparse and Dense Matrix Classes and Methods |
| memoise |
1.1.0 |
Memoisation of Functions |
| modelr |
0.1.8 |
Modelling Functions that Work with the Pipe |
| munsell |
0.5.0 |
Utilities for Using Munsell Colours |
| nlme |
3.1-148 |
Linear and Nonlinear Mixed Effects Models |
| osfr |
0.2.8 |
Interface to the 'Open Science Framework' ('OSF') |
| parallel |
4.0.2 |
Support for Parallel computation in R |
| pillar |
1.4.6 |
Coloured Formatting for Columns |
| pkgconfig |
2.0.3 |
Private Configuration for 'R' Packages |
| R6 |
2.4.1 |
Encapsulated Classes with Reference Semantics |
| RCircos |
1.2.1 |
Circos 2D Track Plot |
| Rcpp |
1.0.5 |
Seamless R and C++ Integration |
| RCurl |
1.98-1.2 |
General Network (HTTP/FTP/...) Client Interface for R |
| readxl |
1.3.1 |
Read Excel Files |
| reprex |
0.3.0 |
Prepare Reproducible Example Code via the Clipboard |
| Rgraphviz |
2.32.0 |
Provides plotting capabilities for R graph objects |
| rlang |
0.4.7 |
Functions for Base Types and Core R and 'Tidyverse' Features |
| rmarkdown |
2.3 |
Dynamic Documents for R |
| rstudioapi |
0.11 |
Safely Access the RStudio API |
| rvest |
0.3.6 |
Easily Harvest (Scrape) Web Pages |
| S4Vectors |
0.26.1 |
Foundation of vector-like and list-like containers in Bioconductor |
| scales |
1.1.1 |
Scale Functions for Visualization |
| stats4 |
4.0.2 |
Statistical Functions using S4 Classes |
| stringi |
1.4.6 |
Character String Processing Facilities |
| tidyselect |
1.1.0 |
Select from a Set of Strings |
| tools |
4.0.2 |
Tools for Package Development |
| utf8 |
1.1.4 |
Unicode Text Processing |
| vctrs |
0.3.2 |
Vector Helpers |
| withr |
2.2.0 |
Run Code 'With' Temporarily Modified Global State |
| xfun |
0.16 |
Miscellaneous Functions by 'Yihui Xie' |
| xml2 |
1.3.2 |
Parse XML |
| XVector |
0.28.0 |
Foundation of external vector representation and manipulation in Bioconductor |
| yaml |
2.2.1 |
Methods to Convert R Data to YAML and Back |
| zlibbioc |
1.34.0 |
An R packaged zlib-1.2.5 |